Info • Yarrowia lipolytica YB566 v1.0

Status

[May 2018] The Yarrowia lipolytica YB566 genome was sequenced with Illumina HiSeq-2500, assembled with SPAdes version 3.11.1, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica YB566 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.27
Sequencing read coverage depth 148.10x
# of contigs 271
# of scaffolds 264
# of scaffolds >= 2Kbp 249
Scaffold N50 43
Scaffold L50 (Mbp) 0.14
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.61, 0.45, 0.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15709 96.2%
Ests est.fasta 151880071 151414590 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1669 1432
transcript 1591 1379
exon 1210 1067
intron 252 141
description:
protein length (aa) 459 386
exons per gene 1.31 1
# of gene models 6764


Collaborators

Cong Trinh, University of Tennessee, Knoxville

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Walker C, Ryu S, Na H, Zane M, LaButti K, Lipzen A, Haridas S, Barry K, Grigoriev IV, Quarterman J, Slininger P, Dien B, Trinh CT
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.
Microbiol Resour Announc. 2018 Sep;7(12):. doi: 10.1128/MRA.01040-18

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.