Info • Yarrowia lipolytica YB567 v1.0

Status

[May 2018] The Yarrowia lipolytica YB567 genome was sequenced with Illumina HiSeq-2500, assembled with SPAdes version 3.11.1, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica YB567 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.27
Sequencing read coverage depth 756.39x
# of contigs 263
# of scaffolds 255
# of scaffolds >= 2Kbp 241
Scaffold N50 39
Scaffold L50 (Mbp) 0.16
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.55, 0.49, 0.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15698 96.1%
Ests est.fasta 151880071 151430857 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1665 1431
transcript 1587 1377
exon 1208 1066
intron 250 141
description:
protein length (aa) 458 385
exons per gene 1.31 1
# of gene models 6776


Collaborators

Cong Trinh, University of Tennessee, Knoxville

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Walker C, Ryu S, Na H, Zane M, LaButti K, Lipzen A, Haridas S, Barry K, Grigoriev IV, Quarterman J, Slininger P, Dien B, Trinh CT
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.
Microbiol Resour Announc. 2018 Sep;7(12):. doi: 10.1128/MRA.01040-18

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.