Info • Zalerion varium MPI-CAGE-AT-0135 v1.0


[January 2019] The Zalerion varium MPI-CAGE-AT-0135 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Zalerion varium v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.61
Sequencing read coverage depth 100.84x
# of contigs 108
# of scaffolds 108
# of scaffolds >= 2Kbp 107
Scaffold N50 13
Scaffold L50 (Mbp) 1.68
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.87, 2.87, 2.76

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49353 46132 93.5%
Ests est.fasta 171108513 170125548 99.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1737 1522
transcript 1574 1369
exon 507 327
intron 80 57
protein length (aa) 443 367
exons per gene 3.10 3
# of gene models 17759


Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.