Info • Zopfiella marina IMI 229743 v1.0

Status

[April 2023] The Zopfiella marina IMI 229743 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 53.64
Sequencing read coverage depth 108.92x
# of contigs 1371
# of scaffolds 1341
# of scaffolds >= 2Kbp 976
Scaffold N50 95
Scaffold L50 (Mbp) 0.16
# of gaps 30
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.71, 0.65, 0.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53480 52070 97.4%
Ests est.fasta 213710992 212348054 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1904 1661
transcript 1726 1494
exon 635 398
intron 106 72
description:
protein length (aa) 484 400
exons per gene 2.72 2
# of gene models 14839


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.