Status
The genome sequence and gene prediction of Zymoseptoria brevis Zb18110 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Assembly Method :: CLC de novo v. 5.5
Sequencing Technology :: Illumina HiSeq
Summary statistics for the Zymoseptoria brevis release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.91 |
| Sequencing read coverage depth | 260x |
| # of contigs | 6070 |
| # of scaffolds | 6070 |
| # of scaffolds >= 2Kbp | 1202 |
| Scaffold N50 | 196 |
| Scaffold L50 (Mbp) | 0.05 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.41, 0.24, 0.23 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1593 | 1304 |
| transcript | 1463 | 1194 |
| exon | 609 | 320 |
| intron | 95 | 60 |
| description: | ||
| protein length (aa) | 488 | 398 |
| exons per gene | 2.40 | 2 |
| # of gene models | 10566 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Grandaubert J, Bhattacharyya A, Stukenbrock EH
RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements.
G3 (Bethesda). 2015 Apr 27;5(7):1323-33. doi: 10.1534/g3.115.017731
Grandaubert J, Bhattacharyya A, Stukenbrock EH
RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements.
G3 (Bethesda). 2015 Apr 27;5(7):1323-33. doi: 10.1534/g3.115.017731
Funding
This project was not sequenced at the JGI.
