Dendrothele bispora CBS 962.96 v1.0
TRANSCRIPT ANNOTATION 
Denbi1/scaffold_1415:8238-9257 gw1.1415.14.1 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Deflinehypothetical proteinAUTOMATIC 
DispositionCatalogAUTOMATIC 
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 583774
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
16987  A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
3677  Interacting selectively with DNA (deoxyribonucleic acid).IPR013324  RNA polymerase sigma factor, regions 3 and 4 
3700  The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
process
6352  Processes involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template resulting in the subsequent synthesis of RNA from that promoter.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
6355  Any process that modulates the frequency, rate or extent of DNA-dependent transcription.IPR013324  RNA polymerase sigma factor, regions 3 and 4 

High Scoring Alignments 

gi|302687070|ref|XP_003033215.1|
hypothetical protein SCHCODRAFT_234039 [Schizophyllum commune H4-8] >gi|300106909|gb|EFI98312.1| hypothetical protein SCHCODRAFT_234039 [Schizophyllum commune H4-8]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
687
0.0
54%
92%
100%

gi|302684131|ref|XP_003031746.1|
hypothetical protein SCHCODRAFT_234854 [Schizophyllum commune H4-8] >gi|300105439|gb|EFI96843.1| hypothetical protein SCHCODRAFT_234854 [Schizophyllum commune H4-8]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
671
0.0
53%
88%
100%

gi|238614889|ref|XP_002398783.1|
hypothetical protein MPER_00549 [Moniliophthora perniciosa FA553] >gi|215476053|gb|EEB99713.1| hypothetical protein MPER_00549 [Moniliophthora perniciosa FA553]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
483
0.0
79%
78%
56%

gi|238576461|ref|XP_002388042.1|
hypothetical protein MPER_12989 [Moniliophthora perniciosa FA553] >gi|215449004|gb|EEB88972.1| hypothetical protein MPER_12989 [Moniliophthora perniciosa FA553]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
421
0.0
71%
65%
55%

aor:AO090005000959
predicted protein  [ Aspergillus oryzae]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
414
0.0
44%
20%
97%

aor:AO090701000445
predicted protein  [ Aspergillus oryzae]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
410
0.0
41%
19%
95%

afm:Afu8g04920
hypothetical protein  [ Aspergillus fumigatus Af293]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
382
7.8E-44
38%
17%
100%

gi|296420935|ref|XP_002840023.1|
hypothetical protein [Tuber melanosporum Mel28] >gi|295636232|emb|CAZ84214.1| unnamed protein product [Tuber melanosporum]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
359
1.11332E-32
29%
80%
96%

gi|169603183|ref|XP_001795013.1|
hypothetical protein SNOG_04600 [Phaeosphaeria nodorum SN15] >gi|160706342|gb|EAT88360.2| hypothetical protein SNOG_04600 [Phaeosphaeria nodorum SN15]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
347
4.23818E-31
30%
11%
95%

gi|396471264|ref|XP_003838830.1|
hypothetical protein LEMA_P025030.1 [Leptosphaeria maculans JN3] >gi|312215399|emb|CBX95351.1| hypothetical protein LEMA_P025030.1 [Leptosphaeria maculans JN3]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
346
5.74024E-31
30%
9%
95%