Gymnopus androsaceus JB14 v1.0
TRANSCRIPT ANNOTATION 
Gyman1/scaffold_114:32936-33703 fgenesh1_kg.114_#_20_#_Locus17621v1rpkm3.91 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Deflinehypothetical proteinAUTOMATIC 
DispositionCatalogAUTOMATIC 
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 921853
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
16987  A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
3677  Interacting selectively with DNA (deoxyribonucleic acid).IPR013324  RNA polymerase sigma factor, regions 3 and 4 
3700  The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
process
6352  Processes involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template resulting in the subsequent synthesis of RNA from that promoter.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
6355  Any process that modulates the frequency, rate or extent of DNA-dependent transcription.IPR013324  RNA polymerase sigma factor, regions 3 and 4 

High Scoring Alignments 

gi|302687070|ref|XP_003033215.1|
hypothetical protein SCHCODRAFT_234039 [Schizophyllum commune H4-8] >gi|300106909|gb|EFI98312.1| hypothetical protein SCHCODRAFT_234039 [Schizophyllum commune H4-8]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
466
0.0
81%
47%
93%

gi|238614889|ref|XP_002398783.1|
hypothetical protein MPER_00549 [Moniliophthora perniciosa FA553] >gi|215476053|gb|EEB99713.1| hypothetical protein MPER_00549 [Moniliophthora perniciosa FA553]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
457
0.0
81%
72%
93%

gi|302684131|ref|XP_003031746.1|
hypothetical protein SCHCODRAFT_234854 [Schizophyllum commune H4-8] >gi|300105439|gb|EFI96843.1| hypothetical protein SCHCODRAFT_234854 [Schizophyllum commune H4-8]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
425
0.0
75%
45%
93%

gi|296420935|ref|XP_002840023.1|
hypothetical protein [Tuber melanosporum Mel28] >gi|295636232|emb|CAZ84214.1| unnamed protein product [Tuber melanosporum]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
276
1.87052E-22
41%
56%
96%

gi|238576461|ref|XP_002388042.1|
hypothetical protein MPER_12989 [Moniliophthora perniciosa FA553] >gi|215449004|gb|EEB88972.1| hypothetical protein MPER_12989 [Moniliophthora perniciosa FA553]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
271
2.83786E-26
71%
41%
63%

gi|342867494|gb|EGU72471.1|
hypothetical protein FOXB_17020 [Fusarium oxysporum Fo5176]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
262
4.56808E-25
52%
61%
87%

gi|342874684|gb|EGU76657.1|
hypothetical protein FOXB_12834 [Fusarium oxysporum Fo5176]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
252
1.00129E-23
49%
10%
87%

gi|46109622|ref|XP_381869.1|
hypothetical protein FG01693.1 [Gibberella zeae PH-1]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
244
1.18364E-22
46%
7%
87%

gi|302907970|ref|XP_003049765.1|
hypothetical protein NECHADRAFT_74068 [Nectria haematococca mpVI 77-13-4] >gi|256730701|gb|EEU44052.1| hypothetical protein NECHADRAFT_74068 [Nectria haematococca mpVI 77-13-4]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
244
1.18364E-22
47%
7%
87%

gi|171688326|ref|XP_001909103.1|
hypothetical protein [Podospora anserina S mat+] >gi|170944125|emb|CAP70235.1| unnamed protein product [Podospora anserina S mat+]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
239
5.54156E-22
48%
10%
83%