Gymnopus luxurians v1.0
TRANSCRIPT ANNOTATION 
Gymlu1/scaffold_10:350017-350636 estExt_Genewise1.C_10_t10397 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
DispositionCatalogAUTOMATIC 
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 194384
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
16987  A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
3677  Interacting selectively with DNA (deoxyribonucleic acid).IPR013324  RNA polymerase sigma factor, regions 3 and 4 
3700  The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
process
6352  Processes involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template resulting in the subsequent synthesis of RNA from that promoter.IPR013324  RNA polymerase sigma factor, regions 3 and 4 
6355  Any process that modulates the frequency, rate or extent of DNA-dependent transcription.IPR013324  RNA polymerase sigma factor, regions 3 and 4 

High Scoring Alignments 

gi|302687070|ref|XP_003033215.1|
hypothetical protein SCHCODRAFT_234039 [Schizophyllum commune H4-8] >gi|300106909|gb|EFI98312.1| hypothetical protein SCHCODRAFT_234039 [Schizophyllum commune H4-8]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
572
0.0
81%
59%
100%

gi|238614889|ref|XP_002398783.1|
hypothetical protein MPER_00549 [Moniliophthora perniciosa FA553] >gi|215476053|gb|EEB99713.1| hypothetical protein MPER_00549 [Moniliophthora perniciosa FA553]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
546
0.0
80%
88%
98%

gi|302684131|ref|XP_003031746.1|
hypothetical protein SCHCODRAFT_234854 [Schizophyllum commune H4-8] >gi|300105439|gb|EFI96843.1| hypothetical protein SCHCODRAFT_234854 [Schizophyllum commune H4-8]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
533
0.0
77%
57%
100%

gi|116196844|ref|XP_001224234.1|
hypothetical protein CHGG_05020 [Chaetomium globosum CBS 148.51] >gi|88180933|gb|EAQ88401.1| hypothetical protein CHGG_05020 [Chaetomium globosum CBS 148.51]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
321
3.77331E-33
49%
28%
100%

gi|171688326|ref|XP_001909103.1|
hypothetical protein [Podospora anserina S mat+] >gi|170944125|emb|CAP70235.1| unnamed protein product [Podospora anserina S mat+]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
316
1.77946E-32
48%
14%
100%

gi|336268054|ref|XP_003348792.1|
hypothetical protein SMAC_01815 [Sordaria macrospora k-hell] >gi|289618344|emb|CBI55068.1| unnamed protein product [Sordaria macrospora]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
311
8.39178E-32
48%
14%
100%

gi|46109622|ref|XP_381869.1|
hypothetical protein FG01693.1 [Gibberella zeae PH-1]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
309
1.56056E-31
48%
9%
98%

gi|85108877|ref|XP_962651.1|
hypothetical protein NCU07981 [Neurospora crassa OR74A] >gi|28924262|gb|EAA33415.1| predicted protein [Neurospora crassa OR74A]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
307
2.90206E-31
46%
13%
100%

gi|302907970|ref|XP_003049765.1|
hypothetical protein NECHADRAFT_74068 [Nectria haematococca mpVI 77-13-4] >gi|256730701|gb|EEU44052.1| hypothetical protein NECHADRAFT_74068 [Nectria haematococca mpVI 77-13-4]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
305
5.39676E-31
48%
9%
95%

gi|238576461|ref|XP_002388042.1|
hypothetical protein MPER_12989 [Moniliophthora perniciosa FA553] >gi|215449004|gb|EEB88972.1| hypothetical protein MPER_12989 [Moniliophthora perniciosa FA553]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
304
7.35947E-31
72%
46%
61%