Laccaria bicolor v2.0

TRANSCRIPT ANNOTATION

Lacbi2/LG_1:329203-332708 Lacbi1.e_gww1.29.7.1 Hide

Attribute

Value

Creator

Action

Name

LbCAP64

Francis Martin

Description

Similar to the capsule-associated gene CAP64 of Cryptococcus neoformans; the large insertion in the middle of the sequence suggests this gene is a pseudogene

Francis Martin

Model Notes

editing needed -- other

Francis Martin

Defline

CAP64 protein

Francis Martin

Disposition

Catalog

AUTOMATIC

Literature

Chang,Y.C., Penoyer,L.A. and Kwon-Chung,K.J. (1996)The second capsule gene of cryptococcus neoformans, CAP64, is essential for virulence. Infect. Immun. 64: 1977-1983

Francis Martin

Assessment

Note

Creator

Action

EST evidence

Francis Martin

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 252734

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

High Scoring Alignments
gi\|170107733\|ref\|XP_001885076.1\| CAP64-like protein [Laccaria bicolor S238N-H82] >gi\|164639917\|gb\|EDR04185.1\| CAP64-like protein [Laccaria bicolor S238N-H82] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2552	0.0	93%	100%	100%

gi\|169862802\|ref\|XP_001838025.1\| Cap64 protein [Coprinopsis cinerea okayama7#130] >gi\|116500885\|gb\|EAU83780.1\| Cap64 protein [Coprinopsis cinerea okayama7#130] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1856	0.0	59%	89%	92%

jgi\|Schco1\|77364\|estExt_Genewise1.C_60887 [Schizophyllum commune] view alignment
GO/EC Classification	Score	Evalue	% id	% target	% model
	1829	0.0	61%	98%	99%

jgi\|Serla_S7_9\|464525\|estExt_fgenesh2_kg.C_51972 [Serpula lacrymans var. lacrymans] view alignment
GO/EC Classification	Score	Evalue	% id	% target	% model
	1784	0.0	62%	92%	96%

gi\|302683714\|ref\|XP_003031538.1\| hypothetical protein SCHCODRAFT_77364 [Schizophyllum commune H4-8] >gi\|300105230\|gb\|EFI96635.1\| hypothetical protein SCHCODRAFT_77364 [Schizophyllum commune H4-8] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1730	1.0361E-18	55%	91%	92%

gi\|15141898\|emb\|CAC50236.1\| Cap64 protein [Pleurotus sp. 'Florida'] [Pleurotus sp. 'Florida'] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1714	0.0	49%	91%	89%

jgi\|Agabi_varbisH97_2\|187581\|estExt_fgenesh2_pm.C_100076 [Agaricus bisporus var. bisporus] view alignment
GO/EC Classification	Score	Evalue	% id	% target	% model
	1546	0.0	56%	93%	97%

gi\|170119175\|ref\|XP_001890740.1\| predicted protein [Laccaria bicolor S238N-H82] >gi\|164634224\|gb\|EDQ98605.1\| predicted protein [Laccaria bicolor S238N-H82] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1482	0.0	77%	100%	62%

gi\|134109225\|ref\|XP_776727.1\| hypothetical protein CNBC2180 [Cryptococcus neoformans var. neoformans B-3501A] >gi\|50259407\|gb\|EAL22080.1\| hypothetical protein CNBC2180 [Cryptococcus neoformans var. neoformans B-3501A] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1392	0.0	43%	87%	87%

gi\|58265262\|ref\|XP_569787.1\| capsular associated protein [Cryptococcus neoformans var. neoformans JEC21] >gi\|57226019\|gb\|AAW42480.1\| capsular associated protein [Cryptococcus neoformans var. neoformans JEC21] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1391	0.0	43%	87%	87%