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Info • Abortiporus biennis CCBS 521 v1.0

Status

[November 2017] The Abortiporus biennis CCBS 521 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

The JGI annotation pipeline identified 3,605 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Abortiporus biennis CCBS 521 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.17
Sequencing read coverage depth 139.94x
# of contigs 360
# of scaffolds 360
# of scaffolds >= 2Kbp 343
Scaffold N50 8
Scaffold L50 (Mbp) 2.28
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.24, 3.07, 3.05


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53391 51057 95.6%
Ests est.fasta 116005177 114893772 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1910 1673
transcript 1538 1339
exon 236 147
intron 70 61
description:
protein length (aa) 441 366
exons per gene 6.51 5
# of gene models 11987


Collaborators

Francis Martin, INRA Nancy, France

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.