Status
[November 2017] The Abortiporus biennis CCBS 521 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
The JGI annotation pipeline identified 3,605 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.
Summary statistics for the Abortiporus biennis CCBS 521
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 45.17 |
Sequencing read coverage depth | 139.94x |
# of contigs | 360 |
# of scaffolds | 360 |
# of scaffolds >= 2Kbp | 343 |
Scaffold N50 | 8 |
Scaffold L50 (Mbp) | 2.28 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 4.24, 3.07, 3.05 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 53391 | 51057 | 95.6% |
Ests | est.fasta | 116005177 | 114893772 | 99.0% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1910 | 1673 |
transcript | 1538 | 1339 |
exon | 236 | 147 |
intron | 70 | 61 |
description: | ||
protein length (aa) | 441 | 366 |
exons per gene | 6.51 | 5 |
# of gene models | 11987 |
Collaborators
Francis Martin, INRA Nancy, France
Links
Abortiporus biennis CIRM-BRFM1778 homepage on Mycocosm
Soil Fungi Meta*omics Reference on Mycocosm
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.