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Info • Acremonium strictum DS1bioAY4a v1.0

Status

[Dec 2014] The Acremonium strictum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Acremonium strictum DS1bioAY4a v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.79
Sequencing read coverage depth 120x
# of contigs 81
# of scaffolds 13
# of scaffolds >= 2Kbp 12
Scaffold N50 5
Scaffold L50 (Mbp) 3.56
# of gaps 68
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 5.19, 4.68, 3.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 35537 35474 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1772 1571
transcript 1622 1437
exon 573 358
intron 84 61
description:
protein length (aa) 474 409
exons per gene 2.83 2
# of gene models 13158


Collaborators

Colleen Hansel at the Woods Hole Oceanographic Institution.
Cara M. Santelli at the Smithsonian Institution, Washington, DC.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.