Info • Albatrellus peckianus DAOM 52321 v1.0

Status

[July 2018] The Albatrellus peckianus DAOM 52321 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Albatrellus peckianus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.11
Sequencing read coverage depth 134.34x
# of contigs 239
# of scaffolds 239
# of scaffolds >= 2Kbp 236
Scaffold N50 12
Scaffold L50 (Mbp) 1.42
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.47, 2.81, 2.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 108138 103345 95.6%
Ests est.fasta 144972349 142811262 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1805 1581
transcript 1457 1281
exon 237 147
intron 69 59
description:
protein length (aa) 418 348
exons per gene 6.15 5
# of gene models 15010


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.