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Info • Amanita thiersii Skay4041 v1.0

Status

v1.0 (July, 2012): The assembly release version 1.0 of Amanita thiersii Skay4041 was generated using the Roche 454 and Illumina sequencing platforms and the Newbler, Velvet and AllPathsLG (version R38445) assemblers.

Summary statistics for the Amanita thiersii Skay4041 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 33.69
Sequencing read coverage depth 135.9x
# of contigs 2164
# of scaffolds 1446
# of scaffolds >= 2Kbp 1172
Scaffold N50 95
Scaffold L50 (Mbp) 0.08
# of gaps 718
% of scaffold length in gaps 1.7%
Three largest Scaffolds (Mbp) 1.04, 0.67, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs (grown on grass medium, sequenced with 454 technology) 1375222 1333143 96.9%
Ests ESTs (grown on rich medium, sequenced with 454 technology) 1231280 1192657 96.9%
Other Clusters (assemblies of the ESTs) 25107 24399 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1687 1399
transcript 1360 1107
exon 226 138
intron 67 57
description:
protein length (aa) 423 340
exons per gene 6.02 5
# of gene models 10354


Collaborators

  • Anne Pringle, Harvard University
  • Benjamin Wolfe, Harvard University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.