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Info • Amylocarpus encephaloides TRa018bII v1.0


[March 2019] The Amylocarpus encephaloides TRa018bII genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline.

The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Amylocarpus encephaloides TRa018bII v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.29
Sequencing read coverage depth 127.83x
# of contigs 2449
# of scaffolds 2381
# of scaffolds >= 2Kbp 1600
Scaffold N50 168
Scaffold L50 (Mbp) 0.07
# of gaps 68
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.42, 0.39, 0.37

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 37966 35934 94.6%
Ests est.fasta 98404598 97412939 99.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1770 1523
transcript 1602 1365
exon 534 329
intron 86 57
protein length (aa) 454 368
exons per gene 3.00 3
# of gene models 11869


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.