Info • Antrodiella citrinella FBCC 969 v1.0


[May 2020] The Antrodiella citrinella FBCC 969 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Antrodiella citrinella FBCC 969 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.63
Sequencing read coverage depth 331.52x
# of contigs 255
# of scaffolds 255
# of scaffolds >= 2Kbp 255
Scaffold N50 13
Scaffold L50 (Mbp) 0.95
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.09, 2.77, 2.53

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54578 51518 94.4%
Ests est.fasta 139321701 137907047 99.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1919 1651
transcript 1580 1347
exon 253 159
intron 67 58
protein length (aa) 457 371
exons per gene 6.24 5
# of gene models 13114



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.