Info • Armillaria tabescens CCBAS 213 v1.0

Status

[September 2018] The Armillaria tabescens CCBAS 213 v1.0 genome was sequenced with PacBio, assembled with null, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Armillaria tabescens v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 74.88
Sequencing read coverage depth 103.04x
# of contigs 659
# of scaffolds 659
# of scaffolds >= 2Kbp 630
Scaffold N50 33
Scaffold L50 (Mbp) 0.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.52, 1.96, 1.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 101747 97462 95.8%
Ests est.fasta 182425993 181000671 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1685 1474
transcript 1360 1188
exon 220 137
intron 65 55
description:
protein length (aa) 392 330
exons per gene 6.19 5
# of gene models 19032


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Sahu N, Indic B, Wong-Bajracharya J, Merényi Z, Ke HM, Ahrendt S, Monk TL, Kocsubé S, Drula E, Lipzen A, Bálint B, Henrissat B, Andreopoulos B, Martin FM, Bugge Harder C, Rigling D, Ford KL, Foster GD, Pangilinan J, Papanicolaou A, Barry K, LaButti K, Virágh M, Koriabine M, Yan M, Riley R, Champramary S, Plett KL, Grigoriev IV, Tsai IJ, Slot J, Sipos G, Plett J, Nagy LG
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria.
Nat Microbiol. 2023 Aug 7;():. doi: 10.1038/s41564-023-01448-1

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.