Status
The genome sequence and gene predictions of Blastobotrys (Arxula) adeninivorans strain LS3 were obtained from Cécile Neuvéglise ([email protected]). The genome was originally sequenced by the Génolevures consortium, assembled into 4 chromosomes, annotated and published in Biotechnology for Biofuels (Kunze G., Gaillardin C., et al., 2014). It is maintained by the authors and regularly updated on the GRYC website (http://gryc.inra.fr).
Summary statistics for the Arxula adeninivorans LS3
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 11.80 |
| Sequencing read coverage depth | 00.0x |
| # of contigs | 6 |
| # of scaffolds | 4 |
| # of scaffolds >= 2Kbp | 4 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 3.83 |
| # of gaps | 2 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.30, 3.83, 2.02 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1442 | 1215 |
| transcript | 1429 | 1206 |
| exon | 1243 | 1056 |
| intron | 89 | 53 |
| description: | ||
| protein length (aa) | 476 | 402 |
| exons per gene | 1.15 | 1 |
| # of gene models | 6119 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C
The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.
Biotechnol Biofuels. 2014;7():66. doi: 10.1186/1754-6834-7-66
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C
The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.
Biotechnol Biofuels. 2014;7():66. doi: 10.1186/1754-6834-7-66
Funding
This project was not sequenced at the JGI.
