Info • Aspergillus ambiguus v1.0

Status

[October 2016] The Aspergillus ambiguus CBS 117.58 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.

Summary statistics for the Aspergillus ambiguus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.37
Sequencing read coverage depth 92.6x
# of contigs 176
# of scaffolds 149
# of scaffolds >= 2Kbp 123
Scaffold N50 16
Scaffold L50 (Mbp) 0.55
# of gaps 27
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.93, 1.77, 1.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29017 27818 95.9%
Ests est.fasta 40516589 38260615 94.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1850 1612
transcript 1684 1464
exon 525 309
intron 77 59
description:
protein length (aa) 476 405
exons per gene 3.21 3
# of gene models 11088


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.