Info • Aspergillus piperis CBS 112811 v1.0

Status

Assembly v1 (Jul 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus piperis CBS 112811 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.28
Sequencing read coverage depth 102.9x
# of contigs 68
# of scaffolds 47
# of scaffolds >= 2Kbp 47
Scaffold N50 9
Scaffold L50 (Mbp) 1.12
# of gaps 21
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.34, 3.20, 2.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 28370 28125 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1856 1599
transcript 1663 1448
exon 512 304
intron 88 63
description:
protein length (aa) 477 400
exons per gene 3.25 3
# of gene models 12069


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.