Info • Aurantiochytrium limacinum ATCC MYA-1381

Status

The Aurantiochytrium limacinum genome was sequenced using the 454 sequencing platform and assembled with Newbler.

Summary statistics for the Aurantiochytrium limacinum ATCC MYA-1381 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 60.93
Sequencing read coverage depth 31.25x
# of contigs 1118
# of scaffolds 181
# of scaffolds >= 2Kbp 181
Scaffold N50 10
Scaffold L50 (Mbp) 2.46
# of gaps 937
% of scaffold length in gaps 1.5%
Three largest Scaffolds (Mbp) 5.48, 3.75, 3.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests 454 ESTs 1509263 1448960 96.0%
Other 454_Isotigs 13421 12935 96.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1674 1238
transcript 1453 1119
exon 1002 658
intron 494 139
description:
protein length (aa) 446 334
exons per gene 1.45 1
# of gene models 14859


Collaborators

Jackie L. Collier Ph.D., School of Marine and Atmospheric Sciences, Stony Brook University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.