Status
The Aurantiochytrium limacinum genome was sequenced using the 454 sequencing platform and assembled with Newbler.
Summary statistics for the Aurantiochytrium limacinum ATCC
MYA-1381 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 60.93 |
| Sequencing read coverage depth | 31.25x |
| # of contigs | 1118 |
| # of scaffolds | 181 |
| # of scaffolds >= 2Kbp | 181 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 2.46 |
| # of gaps | 937 |
| % of scaffold length in gaps | 1.5% |
| Three largest Scaffolds (Mbp) | 5.48, 3.75, 3.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | 454 ESTs | 1509263 | 1448960 | 96.0% |
| Other | 454_Isotigs | 13421 | 12935 | 96.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1674 | 1238 |
| transcript | 1453 | 1119 |
| exon | 1002 | 658 |
| intron | 494 | 139 |
| description: | ||
| protein length (aa) | 446 | 334 |
| exons per gene | 1.45 | 1 |
| # of gene models | 14859 |
Collaborators
Jackie L. Collier Ph.D., School of Marine and Atmospheric Sciences, Stony Brook University
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
