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Info • Baudoinia compniacensis UAMH 10762 (4089826) v1.0

Status

Version 1.0 (June 2011). This draft genome assembly of Baudoinia compniacensis was sequenced using Roche (454), Sanger fosmids and shredded consensus from velvet assembled Illumina data.

Summary statistics for the Baudoinia compniacensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.88
Sequencing read coverage depth 43.53
# of contigs 35
# of scaffolds 19
# of scaffolds >= 2Kbp 19
Scaffold N50 7
Scaffold L50 (Mbp) 1.30
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.03, 2.03, 1.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_clusters 28083 26894 95.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1548 1323
transcript 1460 1236
exon 681 415
intron 79 60
description:
protein length (aa) 417 338
exons per gene 2.14 2
# of gene models 10513


Collaborators

Igor Grigoriev, DOE-JGI
James Scott, University of Toronto, Canada

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.