Info • Benjaminiella poitrasii RSA 903 v1.0

Status

[September 2018] The Benjaminiella poitrasii RSA 903 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Benjaminiella poitrasii RSA 903 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.50
Sequencing read coverage depth 244.22x
# of contigs 20
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 4
Scaffold L50 (Mbp) 3.50
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.32, 4.35, 4.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58167 51345 88.3%
Ests est.fasta 80308843 79655881 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1666 1418
transcript 1389 1165
exon 336 198
intron 91 75
description:
protein length (aa) 402 323
exons per gene 4.14 3
# of gene models 11659


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.