Info • Bisporella sp. PMI_857 v1.0

Status

[December 2016] The Bisporella sp. PMI_857 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Bisporella sp. PMI_857 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.47
Sequencing read coverage depth 68.43x
# of contigs 479
# of scaffolds 479
# of scaffolds >= 2Kbp 433
Scaffold N50 30
Scaffold L50 (Mbp) 0.60
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.03, 1.55, 1.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52825 47592 90.1%
Ests est.fasta 119201368 118131761 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1652 1412
transcript 1478 1250
exon 468 290
intron 83 58
description:
protein length (aa) 434 355
exons per gene 3.16 3
# of gene models 17945


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.