Info • Blakeslea trispora NRRL 2456 v1.0

Status

[Feb 2016] The Blakeslea trispora NRRL 2456 genome was sequenced using the PacBio platform and assembled together with Falcon version 0.3.0 (https://github.com/PacificBiosciences/FALCON) and improved with finisherSC version 2.0 (Lam et al., 2014), then polished with Quiver version
smrtanalysis_2.3.0.140936 (Chin et al., 2013). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Blakeslea trispora NRRL 2456 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.51
Sequencing read coverage depth 80x
# of contigs 328
# of scaffolds 328
# of scaffolds >= 2Kbp 328
Scaffold N50 44
Scaffold L50 (Mbp) 0.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.88, 0.87, 0.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42663 38576 90.4%
Ests est.fasta 143452424 140383483 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1544 1294
transcript 1311 1075
exon 334 193
intron 81 64
description:
protein length (aa) 385 304
exons per gene 3.93 3
# of gene models 11687


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.