Info • Blyttiomyces helicus single-cell v1.0


[June 2016] This is a combined assembly from 5 individual Illumina HiSeq single-cell libraries: four 1-cell and one 100-cell. Assembled together using Spades (v3.6.0). All scaffolds are >=2kb.

Summary statistics for the Blyttiomyces helicus single-cell v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.47
Sequencing read coverage depth 1.0x
# of contigs 9265
# of scaffolds 8398
# of scaffolds >= 2Kbp 8398
Scaffold N50 1974
Scaffold L50 (Mbp) 0.01
# of gaps 867
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.07, 0.06, 0.05

Gene Models FilteredModels3
length (bp) of: average median
gene 1506 1212
transcript 1078 846
exon 247 163
intron 129 99
protein length (aa) 359 282
exons per gene 4.36 3
# of gene models 12167


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.