Info • Cadophora sp. M221


The Cadophora sp. M221 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on June 8, 2022. The JGI Annotation Pipeline was used to add functional annotation to this genome. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 755 models from Cadophora sp. M221 and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Genome Assembly
Genome Assembly size (Mbp) 58.61
Sequencing read coverage depth 57x
# of contigs 2734
# of scaffolds 2734
# of scaffolds >= 2Kbp 2194
Scaffold N50 359
Scaffold L50 (Mbp) 0.05
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.32, 0.21, 0.20

Gene Models FilteredModels1
length (bp) of: average median
gene 1585 1341
transcript 1395 1158
exon 442 255
intron 90 59
protein length (aa) 465 386
exons per gene 3.16 3
# of gene models 16899

Genome Reference(s)



This project was not sequenced at the JGI.