Info • Calycina marina TRa3180A v1.0

Status

[March 2019] The Calycina marina TRa3180A genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline.

The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Calycina marina TRa3180A v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.21
Sequencing read coverage depth 185.26x
# of contigs 1355
# of scaffolds 1318
# of scaffolds >= 2Kbp 1168
Scaffold N50 173
Scaffold L50 (Mbp) 0.05
# of gaps 37
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.38, 0.32, 0.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43973 35756 81.3%
Ests est.fasta 128904638 127418983 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1758 1516
transcript 1587 1338
exon 506 305
intron 82 56
description:
protein length (aa) 444 356
exons per gene 3.13 3
# of gene models 9558


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hagestad OC, Hou L, Andersen JH, Hansen EH, Altermark B, Li C, Kuhnert E, Cox RJ, Crous PW, Spatafora JW, Lail K, Amirebrahimi M, Lipzen A, Pangilinan J, Andreopoulos W, Hayes RD, Ng V, Grigoriev IV, Jackson SA, Sutton TDS, Dobson ADW, Rämä T
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.
IMA Fungus. 2021 Aug 9;12(1):21. doi: 10.1186/s43008-021-00072-0

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.