Info • Candida albicans SC5314


The genome and gene models of Candida albicans SC5314 were downloaded from NCBI on Oct 21, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

Assembly Method :: Bowtie v. 1.0
Sequencing Technology :: Illumina GAIIx

Summary statistics for the Candida albicans SC5314 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.28
Sequencing read coverage depth 700x
# of contigs 38
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 2.23
# of gaps 30
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.19, 2.29, 2.23

Gene Models ExternalModels
length (bp) of: average median
gene 1496 1242
transcript 1485 1239
exon 1392 1161
intron 167 87
protein length (aa) 495 413
exons per gene 1.07 1
# of gene models 6040

Genome Reference(s)


This project was not sequenced at the JGI.