Info • Tortispora caseinolytica Y-17796 v1.0


v1.0  This draft release was produced using shredded consensus from Velvet assembled Illumina data and Roche (454) standard and paired end data and assembled using Newbler.  Gap closure with gapResolution closed 66 gaps in the inital assembly.

Summary statistics for the Candida caseinolytica Y-17796 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 9.18
Sequencing read coverage depth 47.89
# of contigs 49
# of scaffolds 6
# of scaffolds >= 2Kbp 6
Scaffold N50 2
Scaffold L50 (Mbp) 3.11
# of gaps 43
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 3.12, 3.11, 2.61

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Contigs 7146 6496 90.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1506 1290
transcript 1473 1268
exon 1224 1023
intron 163 74
protein length (aa) 443 368
exons per gene 1.20 1
# of gene models 4657


  • Igor Grigoriev, DOE Joint Genome Institute
  • Thomas Jeffries, USDA Forest Service, Forest Products Laboratory

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.