Info • Candida tropicalis MYA3404

Status

The genome sequence of Candida tropicalis MYA3404 has not been determined by the Joint Genome Institute (JGI), but was downloaded from NCBI on July 20, 2020. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. Gene models were provided by Krishnendu Guin and Kaustuv Sanyal. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Candida tropicalis MYA3404 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.61
Sequencing read coverage depth Unknown
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 2.50
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.84, 2.66, 2.50


Gene Models ExternalModels
length (bp) of: average median
gene 1517 1260
transcript 1505 1245
exon 1411 1167
intron 184 89
description:
protein length (aa) 502 415
exons per gene 1.07 1
# of gene models 6134


Collaborators

  • Kaustuv Sanyal, Jawaharlal Nehru Centre for Advanced Scientific Research, India

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Guin K, Chen Y, Mishra R, Muzaki SRB, Thimmappa BC, O'Brien CE, Butler G, Sanyal A, Sanyal K
Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres.
Elife. 2020 May 29;9():. doi: 10.7554/eLife.58556

Funding

This project was not sequenced at the JGI.