Info • Caulochytrium protostelioides ATCC 52028 single-cell v1.0


[January 2018] The Caulochytrium protostelioides ATCC 52028 genome was sequenced with Illumina and assembled with Spades. Pooled libraries were annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Caulochytrium protosteloides ATCC 52028 single-cell v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.62
Sequencing read coverage depth 1x
# of contigs 5017
# of scaffolds 5001
# of scaffolds >= 2Kbp 1142
Scaffold N50 518
Scaffold L50 (Mbp) 0.00
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.08, 0.06, 0.05

Gene Models FilteredModels1
length (bp) of: average median
gene 1104 804
transcript 1005 729
exon 680 465
intron 208 144
protein length (aa) 335 243
exons per gene 1.48 1
# of gene models 3328


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.