Info • Cercospora berteroae CBS 538.71

Status

The Cercospora berteroae CBS 538.71 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 33.89
Sequencing read coverage depth
# of contigs 2720
# of scaffolds 1801
# of scaffolds >= 2Kbp 693
Scaffold N50 93
Scaffold L50 (Mbp) 0.10
# of gaps 919
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 0.71, 0.45, 0.40


Gene Models ExternalModels
length (bp) of: average median
gene 1580 1313
transcript 1471 1218
exon 631 344
intron 84 59
description:
protein length (aa) 490 406
exons per gene 2.33 2
# of gene models 11903


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

de Jonge R, Ebert MK, Huitt-Roehl CR, Pal P, Suttle JC, Spanner RE, Neubauer JD, Jurick WM 2nd, Stott KA, Secor GA, Thomma BPHJ, Van de Peer Y, Townsend CA, Bolton MD
Gene cluster conservation provides insight into cercosporin biosynthesis and extends production to the genus Colletotrichum.
Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5459-E5466. doi: 10.1073/pnas.1712798115

Links

Funding

This project was not sequenced at the JGI.