Info • Ceratobasidium sp. 395 v1.0


[June 2021] The Ceratobasidium sp. 395 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Genome Assembly
Genome Assembly size (Mbp) 85.35
Sequencing read coverage depth 210.83x
# of contigs 274
# of scaffolds 274
# of scaffolds >= 2Kbp 274
Scaffold N50 26
Scaffold L50 (Mbp) 0.84
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.65, 3.29, 3.18

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 84801 76703 90.5%
Ests est.fasta 217568767 213775211 98.3%

Gene Models FilteredModels2
length (bp) of: average median
gene 1932 1680
transcript 1541 1323
exon 231 141
intron 71 57
protein length (aa) 454 369
exons per gene 6.66 5
# of gene models 18780



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.