Info • Ceriporia viridans OMC1683 v1.0


[October 2018] The Ceriporia viridans OMC1683 genome was sequenced with PacBio, assembled with Falcon (v1.8.8), and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Ceriporia viridans OMC1683 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 62.63
Sequencing read coverage depth 166.18x
# of contigs 410
# of scaffolds 410
# of scaffolds >= 2Kbp 408
Scaffold N50 23
Scaffold L50 (Mbp) 0.49
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.11, 3.52, 2.45

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 87052 82870 95.2%
Ests est.fasta 243645435 240676574 98.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1854 1608
transcript 1518 1319
exon 245 152
intron 67 57
protein length (aa) 437 361
exons per gene 6.18 5
# of gene models 14481



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.