Info • Chionosphaera cuniculicola CBS10063 v1.0


[April 2016] The Chionosphaera cuniculicola CBS10063 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Chionosphaera cuniculicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.16
Sequencing read coverage depth 89.4x
# of contigs 43
# of scaffolds 19
# of scaffolds >= 2Kbp 15
Scaffold N50 3
Scaffold L50 (Mbp) 2.40
# of gaps 24
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 2.91, 2.62, 2.40

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34056 33680 98.9%
Ests est.fasta 156829911 151757741 96.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1756 1531
transcript 1495 1284
exon 242 144
intron 53 50
protein length (aa) 437 359
exons per gene 6.17 5
# of gene models 7187


Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.