Info • Chytriomyces hyalinus JEL632 v1.0

Status

[June 2018] The Chytriomyces hyalinus JEL632 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Chytriomyces hyalinus JEL632 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.10
Sequencing read coverage depth 47.82x
# of contigs 294
# of scaffolds 294
# of scaffolds >= 2Kbp 290
Scaffold N50 37
Scaffold L50 (Mbp) 0.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.05, 0.99, 0.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49432 43357 87.7%
Ests est.fasta 164734964 160391302 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1794 1473
transcript 1525 1246
exon 336 208
intron 78 68
description:
protein length (aa) 454 357
exons per gene 4.54 4
# of gene models 15516


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.