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Info • Cladorrhinum bulbillosum DJ3 v1.0

Status

[September 2016] The Cladorrhinum bulbillosum DJ3 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cladorrhinum bulbillosum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.74
Sequencing read coverage depth 119.03x
# of contigs 20
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 3
Scaffold L50 (Mbp) 5.20
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.23, 6.43, 5.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 56102 50917 90.8%
Ests est.fasta 348522056 345183262 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1738 1458
transcript 1568 1303
exon 631 394
intron 117 73
description:
protein length (aa) 459 371
exons per gene 2.49 2
# of gene models 12786


Collaborators

Jonathan Walton, Michigan State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.