Info • Cladorrhinum microsclerotigenum CBS 290.75 v1.0

Status

[March 2022] The Cladorrhinum microsclerotigenum CBS 290.75 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 33.15
Sequencing read coverage depth 186x
# of contigs 210
# of scaffolds 197
# of scaffolds >= 2Kbp 189
Scaffold N50 31
Scaffold L50 (Mbp) 0.32
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.42, 1.03, 0.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43313 41827 96.6%
Ests est.fasta 85943985 85161928 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1949 1683
transcript 1804 1551
exon 692 443
intron 92 66
description:
protein length (aa) 500 410
exons per gene 2.61 2
# of gene models 10782


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.