Info • Cladochytrium polystomum WB228 v1.0

Status

[March 2018] The Cladochytrium polystomum WB228 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cladochytrium polystomum WB228 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 81.19
Sequencing read coverage depth 53.25x
# of contigs 943
# of scaffolds 943
# of scaffolds >= 2Kbp 925
Scaffold N50 105
Scaffold L50 (Mbp) 0.22
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.97, 0.77, 0.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 69486 62284 89.6%
Ests est.fasta 140739659 138614441 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1957 1645
transcript 1587 1296
exon 336 194
intron 102 73
description:
protein length (aa) 463 366
exons per gene 4.72 4
# of gene models 16599


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.