Status
The genome sequence and gene models of Claviceps purpurea 20.1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.09 |
| Sequencing read coverage depth | |
| # of contigs | 1425 |
| # of scaffolds | 191 |
| # of scaffolds >= 2Kbp | 191 |
| Scaffold N50 | 25 |
| Scaffold L50 (Mbp) | 0.43 |
| # of gaps | 1234 |
| % of scaffold length in gaps | 3.7% |
| Three largest Scaffolds (Mbp) | 0.98, 0.95, 0.92 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1663 | 1402 |
| transcript | 1449 | 1185 |
| exon | 532 | 264 |
| intron | 126 | 90 |
| description: | ||
| protein length (aa) | 483 | 395 |
| exons per gene | 2.72 | 2 |
| # of gene models | 8823 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, Roe BA, O'Sullivan DM, Scott B, Tudzynski P, An Z, Arnaoudova EG, Bullock CT, Charlton ND, Chen L, Cox M, Dinkins RD, Florea S, Glenn AE, Gordon A, Güldener U, Harris DR, Hollin W, Jaromczyk J, Johnson RD, Khan AK, Leistner E, Leuchtmann A, Li C, Liu J, Liu J, Liu M, Mace W, Machado C, Nagabhyru P, Pan J, Schmid J, Sugawara K, Steiner U, Takach JE, Tanaka E, Webb JS, Wilson EV, Wiseman JL, Yoshida R, Zeng Z
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci.
PLoS Genet. 2013;9(2):e1003323. doi: 10.1371/journal.pgen.1003323
Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, Roe BA, O'Sullivan DM, Scott B, Tudzynski P, An Z, Arnaoudova EG, Bullock CT, Charlton ND, Chen L, Cox M, Dinkins RD, Florea S, Glenn AE, Gordon A, Güldener U, Harris DR, Hollin W, Jaromczyk J, Johnson RD, Khan AK, Leistner E, Leuchtmann A, Li C, Liu J, Liu J, Liu M, Mace W, Machado C, Nagabhyru P, Pan J, Schmid J, Sugawara K, Steiner U, Takach JE, Tanaka E, Webb JS, Wilson EV, Wiseman JL, Yoshida R, Zeng Z
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci.
PLoS Genet. 2013;9(2):e1003323. doi: 10.1371/journal.pgen.1003323
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
This project was not sequenced at the JGI.
