Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Climacocystis borealis CliBor001 v1.0

Status

[January 2017] The Climacocystis borealis CliBor001 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline.

The JGI annotation pipeline identified 5,008 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Climacocystis borealis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.88
Sequencing read coverage depth 180.77x
# of contigs 677
# of scaffolds 677
# of scaffolds >= 2Kbp 674
Scaffold N50 28
Scaffold L50 (Mbp) 0.45
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.35, 1.62, 1.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 69770 66809 95.8%
Ests est.fasta 139573571 137247955 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1786 1511
transcript 1411 1185
exon 221 141
intron 71 60
description:
protein length (aa) 411 334
exons per gene 6.40 5
# of gene models 13422


Collaborators

Håvard Kauserud, University of Oslo

Joseph W. Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.