Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Clohesyomyces aquaticus v1.0

Status

[March 2016] The Clohesyomyces aquaticus CBS 115471 genome was sequenced using PacBio reads and assembled with Falcon version 0.3.0, improved with finisherSC version 2.0 and polished with Quiver version smrtanalysis_2.3.0.140936.

Mitochondrial genome was assembled separately and is available in the downloads section.

 

Summary statistics for the Clohesyomyces aquaticus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.68
Sequencing read coverage depth 121.386x
# of contigs 761
# of scaffolds 761
# of scaffolds >= 2Kbp 737
Scaffold N50 87
Scaffold L50 (Mbp) 0.17
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.67, 0.66, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34670 32464 93.6%
Ests est.fasta 146814202 136903873 93.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1606 1369
transcript 1453 1218
exon 515 320
intron 86 58
description:
protein length (aa) 428 347
exons per gene 2.82 2
# of gene models 15810


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.