Info • Cochliobolus heterostrophus C4 v1.0

Status

Version 1.0, September 2011. The genome of Cochliobolus heterostrophus strain C4 was sequenced using Illumina technology and assembled using AllPathsLG.

ESTs from Cochliobolus heterostrophus strain C5 were used to assist in gene prediction.

Summary statistics for the Cochliobolus heterostrophus C4 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.93
Sequencing read coverage depth 67.5x
# of contigs 586
# of scaffolds 207
# of scaffolds >= 2Kbp 139
Scaffold N50 13
Scaffold L50 (Mbp) 0.96
# of gaps 379
% of scaffold length in gaps 2.5%
Three largest Scaffolds (Mbp) 2.28, 1.65, 1.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other CocheC5_1_EST_clusters 88751 71986 81.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1571 1339
transcript 1413 1202
exon 529 312
intron 97 59
description:
protein length (aa) 435 359
exons per gene 2.67 2
# of gene models 12720


Collaborators

  • Igor Grigoriev, DOE Joint Genome Institute
  • Gillian Turgeon, Cornell University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.