Info • Coccidioides posadasii Silveira

Status

The genome sequence and gene models of Coccidioides posadasii Silveira were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 27.58
Sequencing read coverage depth
# of contigs 464
# of scaffolds 54
# of scaffolds >= 2Kbp 54
Scaffold N50 8
Scaffold L50 (Mbp) 1.22
# of gaps 410
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 3.47, 2.43, 1.71


Gene Models ExternalModels
length (bp) of: average median
gene 1829 1558
transcript 1650 1398
exon 547 309
intron 91 69
description:
protein length (aa) 410 322
exons per gene 3.02 3
# of gene models 10228


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Neafsey DE, Barker BM, Sharpton TJ, Stajich JE, Park DJ, Whiston E, Hung CY, McMahan C, White J, Sykes S, Heiman D, Young S, Zeng Q, Abouelleil A, Aftuck L, Bessette D, Brown A, FitzGerald M, Lui A, Macdonald JP, Priest M, Orbach MJ, Galgiani JN, Kirkland TN, Cole GT, Birren BW, Henn MR, Taylor JW, Rounsley SD
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control.
Genome Res. 2010 Jul;20(7):938-46. doi: 10.1101/gr.103911.109

Funding

This project was not sequenced at the JGI.