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Info • Cochliobolus sativus ND90Pr v1.0

Status

(version 1.0, June 2011) This draft release was produced using Sanger reads, shredded consensus from velvet assembled illumina data, Roche (454) standard and Roche (454) paired end. Gap closure with gapResolution closed 164 gaps (24%) in initial assembly.

 

Summary statistics for the Cochliobolus sativus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.42
Sequencing read coverage depth 42.43x
# of contigs 478
# of scaffolds 157
# of scaffolds >= 2Kbp 157
Scaffold N50 7
Scaffold L50 (Mbp) 1.79
# of gaps 321
% of scaffold length in gaps 3.5%
Three largest Scaffolds (Mbp) 3.64, 3.03, 2.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_clusters 214773 28700 13.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1691 1460
transcript 1545 1322
exon 587 361
intron 91 58
description:
protein length (aa) 444 367
exons per gene 2.63 2
# of gene models 12250


Collaborators

  • Igor Grigoriev, Joint Genome Institute
  • Shaobin Zhong, North Dakota State University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.