Info • Cochliobolus victoriae FI3 v1.0


May 2012. The genome of Cochliobolus victoriae FI3 was sequenced using Illumina technology and assembled using Velvet (version 1.1.04) and ALLPATHS (version r41043). There are no ESTs available for this organism.

Summary statistics for the Cochliobolus victoriae FI3 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.83
Sequencing read coverage depth 304x
# of contigs 709
# of scaffolds 676
# of scaffolds >= 2Kbp 435
Scaffold N50 47
Scaffold L50 (Mbp) 0.23
# of gaps 33
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.87, 0.56, 0.55

Gene Models FilteredModels1
length (bp) of: average median
gene 1432 1206
transcript 1296 1071
exon 501 277
intron 88 58
protein length (aa) 432 357
exons per gene 2.59 2
# of gene models 12894


B. Gillian Turgeon, Cornell University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.