Info • Coemansia reversa NRRL 1564 v1.0

Status

This draft release of Coemansia reversa was produced using Sanger reads, shredded consensus from Velvet-assembled Illumina data, Roche (454) standard and paired end data.  These data were assembled using Newbler.

Summary statistics for the Coemansia reversa NRRL 1564 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 21.84
Sequencing read coverage depth 38.24
# of contigs 1063
# of scaffolds 346
# of scaffolds >= 2Kbp 346
Scaffold N50 21
Scaffold L50 (Mbp) 0.35
# of gaps 717
% of scaffold length in gaps 5.5%
Three largest Scaffolds (Mbp) 0.93, 0.93, 0.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 1260404 1226835 97.3%
Other Isotigs 7256 7007 96.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1450 1170
transcript 1332 1074
exon 879 614
intron 231 137
description:
protein length (aa) 410 324
exons per gene 1.51 1
# of gene models 7347


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.