Status
This draft release of Coemansia reversa was produced using Sanger reads, shredded consensus from Velvet-assembled Illumina data, Roche (454) standard and paired end data. These data were assembled using Newbler.
Summary statistics for the Coemansia reversa NRRL 1564
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 21.84 |
| Sequencing read coverage depth | 38.24 |
| # of contigs | 1063 |
| # of scaffolds | 346 |
| # of scaffolds >= 2Kbp | 346 |
| Scaffold N50 | 21 |
| Scaffold L50 (Mbp) | 0.35 |
| # of gaps | 717 |
| % of scaffold length in gaps | 5.5% |
| Three largest Scaffolds (Mbp) | 0.93, 0.93, 0.82 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | ESTs | 1260404 | 1226835 | 97.3% |
| Other | Isotigs | 7256 | 7007 | 96.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1450 | 1170 |
| transcript | 1332 | 1074 |
| exon | 879 | 614 |
| intron | 231 | 137 |
| description: | ||
| protein length (aa) | 410 | 324 |
| exons per gene | 1.51 | 1 |
| # of gene models | 7347 |
Collaborators
- Joey Spatafora, Ph.D., Dept of Botany & Plant Pathology, Oregon State University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Chang Y, Wang S, Sekimoto S, Aerts AL, Choi C, Clum A, LaButti KM, Lindquist EA, Yee Ngan C, Ohm RA, Salamov AA, Grigoriev IV, Spatafora JW, Berbee ML
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants.
Genome Biol Evol. 2015 May 14;7(6):1590-601. doi: 10.1093/gbe/evv090
Chang Y, Wang S, Sekimoto S, Aerts AL, Choi C, Clum A, LaButti KM, Lindquist EA, Yee Ngan C, Ohm RA, Salamov AA, Grigoriev IV, Spatafora JW, Berbee ML
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants.
Genome Biol Evol. 2015 May 14;7(6):1590-601. doi: 10.1093/gbe/evv090
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
