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Info • Colletotrichum caudatum CBS131602 v1.0

Status

[May 2015] The Colletotrichum caudatum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum caudatum CBS131602 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.20
Sequencing read coverage depth 143x
# of contigs 1381
# of scaffolds 1257
# of scaffolds >= 2Kbp 1060
Scaffold N50 134
Scaffold L50 (Mbp) 0.09
# of gaps 124
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.59, 0.54, 0.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 41181 40351 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1600 1364
transcript 1452 1206
exon 556 358
intron 94 67
description:
protein length (aa) 401 318
exons per gene 2.61 2
# of gene models 15294


Collaborators

Jo Anne Crouch, Ph.D., USDA-ARS, Beltsville, MD

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.