Info • Colletotrichum chlorophyti NTL11

Status

The genome sequence and gene prediction of Colletotrichum chlorophyti  NTL11 have not been determined by the Joint Genome Institute (JGI), but were provided by Ken Shirasu at the RIKEN Center for Sustainable Resource Science.

Summary statistics for the Colletotrichum chlorophyti release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.39
Sequencing read coverage depth
# of contigs 1879
# of scaffolds 558
# of scaffolds >= 2Kbp 224
Scaffold N50 26
Scaffold L50 (Mbp) 0.64
# of gaps 1321
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 2.38, 1.93, 1.78


Gene Models ExternalModels
length (bp) of: average median
gene 1667 1424
transcript 1497 1272
exon 518 283
intron 92 64
description:
protein length (aa) 499 424
exons per gene 2.89 2
# of gene models 10310


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Gan P, Narusaka M, Tsushima A, Narusaka Y, Takano Y, Shirasu K
Draft Genome Assembly of Colletotrichum chlorophyti, a Pathogen of Herbaceous Plants.
Genome Announc. 2017 Mar 9;5(10):. doi: 10.1128/genomeA.01733-16

Funding

This project was not sequenced at the JGI.