Info • Colletotrichum eremochloae CBS129661 v1.0


[Jan 2015] The Colletotrichum eremochloae genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum eremochloae CBS129661 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.21
Sequencing read coverage depth 137.6x
# of contigs 473
# of scaffolds 403
# of scaffolds >= 2Kbp 340
Scaffold N50 40
Scaffold L50 (Mbp) 0.35
# of gaps 70
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.47, 1.37, 1.07

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 42569 41834 98.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1670 1427
transcript 1515 1276
exon 555 354
intron 92 66
protein length (aa) 422 344
exons per gene 2.73 2
# of gene models 15169


Jo Anne Crouch, Ph.D., USDA-ARS, Beltsville, MD


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.